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IDSCO4035 TypeCDS
From4234713 nt length864
To4235576 aa length287
GenesigF pI6.64
DefinitionRNA polymerase sigma factor (fragment) M.W (Da)31756
Note2SCD60.01c AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4185 putative RNA polymerase sigma factor4522.0e-128
sgrSGR_3551 RNA polymerase sigma factor, sigma F5031.0e-143
samSAM23877_3649 RNA polymerase sigma-F factor5130.0e+00
scabSCAB47291 putative RNA polymerase sigma factor4953.0e-141

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 267-13668.52.9e-19

Sigma70_r41Sigma-70, region 4233-28065.02.8e-18

Sigma70_r31Sigma-70 region 3146-20959.03.3e-16

Sigma70_r4_21Sigma-70, region 4227-27940.91.1e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
GHA69363.1 RNA polymerase sigma-F factor [Streptomyces anthocyanicus] 12484.0e-172
WP_011029398.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12475.0e-172
WP_051815052.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12486.1e-172
WP_003974927.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12466.7e-172
GGL34320.1 RNA polymerase sigma-F factor [Streptomyces anthocyanicus] >dbj 12459.3e-172
WP_210984712.1 RNA polymerase sigma factor SigF [Streptomyces sp. RK76] >lc... 12469.5e-172
WP_164272824.1 RNA polymerase sigma factor SigF [Streptomyces rubrogriseus]... 12451.8e-171
WP_079033330.1 RNA polymerase sigma factor SigF [Streptomyces canus] 12432.1e-171
WP_063829740.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12432.2e-171
WP_216724233.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 12422.3e-171

PSORT result

LocalizationCertaintyPSORT said
Not Clear