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IDSCO4234 TypeCDS
From4029164 nt length513
To4028652 aa length170
GeneispF pI5.62
Definitionputative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase M.W (Da)16969
NoteSCD8A.07 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Categorysimilar to unknown proteins

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3968 putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2352.0e-63
sgrSGR_4013 putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2645.0e-72
samSAM23877_3466 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase3002.0e-106
scabSCAB50101 putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2812.0e-77
saceSACE_0440 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1578.0e-40
nfarnfa4370 putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1491.0e-37

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

YgbB1YgbB family17-166151.42.1e-44

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011029522.1 MULTISPECIES: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate s... 7661.4e-102
WP_003974741.1 MULTISPECIES: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate s... 7625.0e-102
WP_127892459.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Strep... 7365.4e-98
WP_159328880.1 MULTISPECIES: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate s... 7356.5e-98
WP_087808640.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Strep... 7271.1e-96
WP_109035191.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Strep... 7261.6e-96
WP_189750188.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Strep... 7243.4e-96
WP_046247757.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, parti... 6861.3e-90
ANB07105.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Streptomyc... 6872.1e-90
AKZ56513.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Streptomyc... 6892.1e-90

PSORT result

LocalizationCertaintyPSORT said
Not Clear