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IDSCO4295 TypeCDS
From3956924 nt length204
To3956721 aa length67
GenescoF4 pI4.58
DefinitionscoF4 cold shock protein M.W (Da)7387
NoteSCD95A.28 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3932 putative cold shock protein1181.0e-28
sgrSGR_3226 putative cold shock protein1342.0e-33
samSAM23877_3411 cold shock protein-like protein1394.0e-46
scabSCAB50421 putative cold shock protein1372.0e-34
saceSACE_1442 cold-shock DNA-binding domain protein927.0e-21

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-64106.34.7e-31

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_004929928.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3492.8e-42
WP_219092312.1 cold shock domain-containing protein [Streptomyces sp. JJ38]... 3467.3e-42
WP_062131691.1 cold-shock protein [Streptomyces sp. CC71] >gb 3467.4e-42
GHE32443.1 hypothetical protein GCM10017771_49290 [Streptomyces capitiformi... 3527.6e-42
WP_006348514.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3468.5e-42
WP_010035953.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3451.0e-41
WP_109445992.1 MULTISPECIES: cold-shock protein [unclassified Streptomyces]... 3461.1e-41
WP_005486335.1 MULTISPECIES: cold-shock protein [Streptomycetaceae] >gb 3451.1e-41
WP_135342270.1 cold-shock protein [Streptomyces palmae] >lcl 3451.2e-41
WP_205357043.1 cold-shock protein [Streptomyces acididurans] >lcl 3441.4e-41

PSORT result

LocalizationCertaintyPSORT said
Not Clear