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IDSCO4338 TypeCDS
From3914786 nt length573
To3914214 aa length190
Gene pI9.68
Definitionhypothetical protein M.W (Da)20149
NoteSCD12A.21 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Categorysimilar to unknown proteins


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3892 putative 2'-5' RNA ligase2262.0e-60
samSAM23877_3367 2'-5' RNA ligase2705.0e-94
scabSCAB51001 putative 2'-5' RNA ligase2222.0e-59

*avm, Streptomyces avermitilis; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

LigT_PEase2LigT like Phosphoesterase9-90, 98-17190.26.5e-26

2_5_RNA_ligase212'-5' RNA ligase superfamily36-16554.79.5e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_210974008.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. RM72] >... 6642.1e-86
WP_011029587.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [Streptomyc... 6607.6e-86
WP_136207392.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. LRa12] ... 6591.4e-85
WP_003974637.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [Streptomyc... 6572.1e-85
WP_030867163.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces violaceorub... 6538.7e-85
WP_217171313.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. AC512_C... 6539.5e-85
WP_165287476.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. SID1036... 6503.1e-84
WP_030186210.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces violaceorub... 6486.1e-84
WP_121708697.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. E5N91] 6461.1e-83
WP_133888939.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. BK208] ... 6451.5e-83

PSORT result

LocalizationCertaintyPSORT said
Not Clear