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IDSCO4441 TypeCDS
From3803888 nt length888
To3803001 aa length295
Gene pI7.22
Definitionputative DNA-binding protein M.W (Da)33594
NoteSCD6.19 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3783 putative DNA-binding protein4579.0e-130
sgrSGR_4257 putative DNA-binding protein4813.0e-137
samSAM23877_3287 Chitinase promoter binding protein 15590.0e+00
scabSCAB52291 putative DNA-binding protein5015.0e-143
saceSACE_1219 transcriptional regulator, XRE family1971.0e-51
nfarnfa41100 putative DNA-binding protein1741.0e-44

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HTH_311Helix-turn-helix domain23-7957.51.1e-15

HTH_31Helix-turn-helix28-7641.59.4e-11

HTH_191Helix-turn-helix domain25-8240.61.9e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011029655.1 MULTISPECIES: Scr1 family TA system antitoxin-like transcrip... 13790.0e+00
AIJ14222.2 DNA-binding protein [Streptomyces lividans TK24] >gb 13730.0e+00
WP_121708817.1 MULTISPECIES: Scr1 family TA system antitoxin-like transcrip... 13650.0e+00
AXL90196.1 transcriptional regulator [Streptomyces sp. CB09001] 13550.0e+00
WP_109035523.1 Scr1 family TA system antitoxin-like transcriptional regulat... 13410.0e+00
WP_153179368.1 MULTISPECIES: Scr1 family TA system antitoxin-like transcrip... 13310.0e+00
WP_161270158.1 Scr1 family TA system antitoxin-like transcriptional regulat... 13210.0e+00
QIP70959.1 XRE family transcriptional regulator [Streptomyces sp. VN1] 13190.0e+00
QNF62913.1 transcriptional regulator [Streptomyces sp. Ae707_A7] 13170.0e+00
WP_078494929.1 MULTISPECIES: Scr1 family TA system antitoxin-like transcrip... 13170.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear