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IDSCO4654 TypeCDS
From3589447 nt length3486
To3585962 aa length1161
GenerpoB pI4.6
DefinitionDNA-directed RNA polymerase beta chain M.W (Da)128477
NoteSCD82.26 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4914 RNA polymerase beta subunit21880.0e+00
sgrSGR_2869 putative RNA polymerase beta subunit22770.0e+00
samSAM23877_4473 DNA-directed RNA polymerase subunit beta23580.0e+00
scabSCAB37191 RNA polymerase beta subunit22770.0e+00
saceSACE_6854 DNA-directed RNA polymerase, beta subunit17710.0e+00
nfarnfa50990 putative RNA polymerase beta subunit17410.0e+00

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb2_61RNA polymerase Rpb2, domain 6630-1047516.93.1e-155

RNA_pol_Rpb2_21RNA polymerase Rpb2, domain 2169-365105.03.2e-30

RNA_pol_Rpb2_31RNA polymerase Rpb2, domain 3424-49299.86.4e-29

RNA_pol_Rpb2_71RNA polymerase Rpb2, domain 71049-112395.32e-27

RNA_pol_Rpb2_451RNA polymerase beta subunit external 1 domain502-56887.45e-25

RNA_pol_Rpb2_11RNA polymerase beta subunit37-40978.15.7e-22

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011029792.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57880.0e+00
WP_003974309.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57830.0e+00
WP_115743687.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. C... 57790.0e+00
WP_121712851.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. E... 57730.0e+00
WP_109034201.1 DNA-directed RNA polymerase subunit beta [Streptomyces rubro... 57710.0e+00
WP_059300004.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57660.0e+00
WP_104634577.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. M... 57660.0e+00
WP_133887667.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. B... 57620.0e+00
WP_053135571.1 DNA-directed RNA polymerase subunit beta [Streptomyces ambof... 57620.0e+00
WP_159329768.1 DNA-directed RNA polymerase subunit beta [Streptomyces tenda... 57600.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear