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IDSCO4757 TypeCDS
From3499292 nt length1260
To3498033 aa length419
Gene pI7.64
Definitionundefined product M.W (Da)45682
NoteSC6G4.35 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4987 putative RNA polymerase ECF-subfamily sigma factor4849.0e-138
sgrSGR_2792 putative RNA polymerase ECF-subfamily sigma factor2864.0e-78
samSAM23877_4553 hypothetical protein5930.0e+00
scabSCAB36341 putative RNA polymerase sigma factor5416.0e-155
saceSACE_6398 putative RNA polymerase, sigma-24 subunit, ECF subfamily2664.0e-72
nfarnfa18820 putative sigma factor3692.0e-103

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 217-7844.87.1e-12

Sigma70_r4_21Sigma-70, region 4117-16634.11.4e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011029845.1 sigma-70 family RNA polymerase sigma factor [Streptomyces co... 13990.0e+00
WP_193486595.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 13980.0e+00
WP_106517722.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13950.0e+00
WP_030867604.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 13950.0e+00
WP_191850411.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 13940.0e+00
WP_003974215.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 13930.0e+00
WP_189284368.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 13920.0e+00
WP_093456811.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 13910.0e+00
WP_202492521.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 13910.0e+00
WP_121709779.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13840.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear