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IDSCO4769 TypeCDS
From3486888 nt length588
To3486301 aa length195
Gene pI6.31
DefinitionECF sigma factor M.W (Da)21326
NoteSCD63.01 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4999 putative RNA polymerase ECF-subfamily sigma factor3152.0e-87
sgrSGR_2758 putative RNA polymerase ECF-subfamily sigma factor3537.0e-99
samSAM23877_4583 ECF RNA polymerase sigma factor SigD3867.0e-140
scabSCAB36221 putative RNA polymerase sigma factor3606.0e-101
saceSACE_6711 RNA polymerase sigma factor1384.0e-34
nfarnfa8920 putative sigma factor1375.0e-34

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4142-19146.02.5e-12

Sigma70_r4_21Sigma-70, region 4141-18944.11.1e-11

Sigma70_r21Sigma-70 region 231-10239.23.9e-10

Sigma70_ECF1ECF sigma factor14-17931.71.2e-07

HTH_161Helix-turn-helix domain16-7726.44.7e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974204.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 10001.8e-137
EOY49748.1 RNA polymerase sigma-70 factor [Streptomyces lividans 1326] 10042.8e-137
WP_031034860.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9976.1e-137
WP_104635747.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9951.1e-136
WP_055418308.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pa... 9951.3e-136
WP_030400271.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9941.7e-136
WP_087807702.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9941.8e-136
WP_019329587.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9914.7e-136
WP_007444033.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9905.8e-136
WP_121748737.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9907.1e-136

PSORT result

LocalizationCertaintyPSORT said
Not Clear