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IDSCO4895 TypeCDS
From3338086 nt length1005
To3339090 aa length334
Gene pI4.6
Definitionputative ECF sigma factor M.W (Da)36822
Note2SCK8.21c AseI frg.K
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3363 putative RNA polymerase ECF-subfamily sigma factor5578.0e-160
sgrSGR_2646 putative RNA polymerase ECF-subfamily sigma factor5262.0e-150
samSAM23877_4717 ECF RNA polymerase sigma factor SigG6390.0e+00
scabSCAB34911 putative RNA polymerase sigma factor5562.0e-159
nfarnfa5260 putative sigma factor3283.0e-91

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 214-7776.49.8e-22

Sigma70_r4_21Sigma-70, region 4133-18657.28.9e-16

NTF21Nuclear transport factor 2 (NTF2) domain207-31640.53.2e-10

SnoaL_21SnoaL-like domain211-30535.51.1e-08

Sigma70_r41Sigma-70, region 4139-18627.02.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974078.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 17450.0e+00
WP_153178252.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 17350.0e+00
WP_054099257.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 17330.0e+00
WP_104634010.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 17330.0e+00
WP_061442875.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 17330.0e+00
WP_030400381.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 17320.0e+00
WP_164366635.1 sigma-70 family RNA polymerase sigma factor [Streptomyces di... 17290.0e+00
WP_164383469.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 17280.0e+00
MYS76450.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 17280.0e+00
WP_108933063.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ar... 17280.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear