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IDSCO4960 TypeCDS
From3271686 nt length507
To3272192 aa length168
Gene pI11.75
Definitionhypothetical protein M.W (Da)18477
Note2SCK31.20c AseI frg.K
SignalP v.4.0Non-secretory protein | plot Categorysimilar to unknown proteins

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3304 putative RNA polymerase ECF-subfamily sigma factor1913.0e-50
sgrSGR_2576 putative RNA polymerase ECF-subfamily sigma factor1292.0e-31
samSAM23877_4776 putative sigma factor2662.0e-93
scabSCAB34351 putative RNA polymerase sigma factor2037.0e-54

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4102-14731.58.1e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974016.1 MULTISPECIES: DNA-directed RNA polymerase sigma-70 factor [S... 4857.6e-60
WP_121717370.1 RNA polymerase subunit sigma-70 [Streptomyces sp. E5N91] 4858.3e-60
WP_136207752.1 RNA polymerase subunit sigma-70 [Streptomyces sp. LRa12] >lc... 4841.2e-59
WP_109033144.1 RNA polymerase subunit sigma-70 [Streptomyces rubrogriseus] ... 4796.4e-59
WP_106517770.1 RNA polymerase subunit sigma-70 [Streptomyces sp. 111WW2] >g... 4733.8e-58
WP_115743914.1 RNA polymerase subunit sigma-70 [Streptomyces sp. CB09001] >... 4561.7e-55
WP_121704355.1 MULTISPECIES: RNA polymerase subunit sigma-70 [unclassified ... 4381.2e-52
WP_217161669.1 RNA polymerase subunit sigma-70 [Streptomyces sp. AC512_CC83... 4362.3e-52
WP_030145692.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces vi... 4352.4e-52
WP_076975999.1 RNA polymerase subunit sigma-70 [Streptomyces sp. M1013] 4328.4e-52

PSORT result

LocalizationCertaintyPSORT said
Not Clear