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IDSCO4996 TypeCDS
From3231439 nt length510
To3231948 aa length169
Gene pI8.7
Definitionputative RNA polymerase ECF sigma factor M.W (Da)18703
Note2SCK36.19c AseI frg.K
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_4062 putative RNA polymerase ECF-subfamily sigma factor2122.0e-56
samSAM23877_4808 putative RNA polymerase ECF sigma factor3034.0e-108
scabSCAB65541 putative RNA polymerase ECF sigma factor1107.0e-26
saceSACE_1454 RNA polymerase ECF sigma factor992.0e-22

*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4103-15555.43.1e-15

Sigma70_r41Sigma-70, region 4108-15751.54.7e-14

Sigma70_r21Sigma-70 region 222-8036.13.8e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003973981.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7001.7e-92
WP_127891846.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 6992.2e-92
WP_115743950.1 SigE family RNA polymerase sigma factor [Streptomyces sp. CB... 6992.2e-92
WP_189738439.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 6992.4e-92
WP_109033177.1 SigE family RNA polymerase sigma factor [Streptomyces rubrog... 6992.5e-92
WP_159324102.1 SigE family RNA polymerase sigma factor [Streptomyces tendae... 6983.1e-92
WP_087807504.1 SigE family RNA polymerase sigma factor [Streptomyces sp. CS... 6974.9e-92
WP_121704376.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 6828.6e-90
WP_059300921.1 SigE family RNA polymerase sigma factor [Streptomyces canus] 6783.4e-89
WP_076976029.1 SigE family RNA polymerase sigma factor [Streptomyces sp. M1... 6775.9e-89

PSORT result

LocalizationCertaintyPSORT said
Not Clear