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IDSCO5147 TypeCDS
From3073818 nt length672
To3073147 aa length223
Gene pI7.14
Definitionputative ECF-subfamily sigma factor M.W (Da)24521
NoteSCP8.10 AseI frg.N
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3117 putative RNA polymerase ECF-subfamily sigma factor3531.0e-98
sgrSGR_2378 putative RNA polymerase ECF-subfamily sigma factor3779.0e-106
samSAM23877_4926 RNA polymerase sigma factor SigE4301.0e-155
scabSCAB31151 putative RNA polymerase sigma factor3892.0e-109
saceSACE_1037 putative ECF family RNA polymerase sigma factor2331.0e-62
nfarnfa47290 putative sigma factor2413.0e-65

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 242-10773.76.9e-21

Sigma70_r4_21Sigma-70, region 4140-19161.05.8e-17

Sigma70_r41Sigma-70, region 4144-19349.02.9e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003973830.1 MULTISPECIES: RNA polymerase sigma factor SigE [Streptomyces... 11001.0e-151
AIJ13520.2 RNA polymerase sigma factor SigE [Streptomyces lividans TK24] >gb... 10979.4e-151
WP_202492533.1 MULTISPECIES: RNA polymerase sigma factor SigE [Streptomyces... 10961.7e-150
WP_115744061.1 RNA polymerase sigma factor SigE [Streptomyces sp. CB09001] ... 10903.1e-150
WP_109033286.1 RNA polymerase sigma factor SigE [Streptomyces rubrogriseus]... 10903.7e-150
WP_121749068.1 RNA polymerase sigma factor SigE [Streptomyces sp. E2N166] 10817.4e-149
WP_030145857.1 RNA polymerase sigma factor SigE [Streptomyces violaceorubid... 10773.0e-148
WP_210963755.1 RNA polymerase sigma factor SigE [Streptomyces sp. b94] >lcl... 10755.8e-148
WP_127895190.1 MULTISPECIES: RNA polymerase sigma factor SigE [Streptomyces... 10741.0e-147
WP_087807376.1 RNA polymerase sigma factor SigE [Streptomyces sp. CS113] >g... 10712.8e-147

PSORT result

LocalizationCertaintyPSORT said
Not Clear