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IDSCO5243 TypeCDS
From2962416 nt length1086
To2963501 aa length361
Genesig1 pI5.18
Definitionsig1 RNA polymerase sigma factor M.W (Da)40151
Note2SC7G11.05c AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3013 putative RNA polymerase sigma factor, sigH4823.0e-137
sgrSGR_2271 RNA polymerase sigma factor4801.0e-136
samSAM23877_5033 RNA polymerase sigma factor6490.0e+00
scabSCAB30101 putative RNA polymerase sigma factor5645.0e-162
saceSACE_5686 RNA polymerase sigma factor2533.0e-68
nfarnfa1570 putative sigma factor2162.0e-57

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 2141-21075.32.1e-21

Sigma70_r41Sigma-70, region 4306-35564.83.2e-18

Sigma70_r31Sigma-70 region 3222-28054.31e-14

Sigma70_r4_21Sigma-70, region 4306-35337.51.3e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
MYU44765.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomyces s... 16390.0e+00
REH23491.1 RNA polymerase sigma-28 (SigD/FliA/WhiG) subunit [Streptomyces sp... 16350.0e+00
WP_003973727.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 16350.0e+00
WP_061442610.1 RNA polymerase sigma factor SigF [Streptomyces sp. CCM_MD201... 16050.0e+00
WP_161270193.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 15990.0e+00
OWA10035.1 RNA polymerase subunit sigma-70 [Streptomyces sp. CS113] 15990.0e+00
OMI87674.1 RNA polymerase subunit sigma [Streptomyces sp. M1013] 15990.0e+00
AZM75635.1 RNA polymerase sigma factor SigF [Streptomyces sp. KPB2] 15950.0e+00
WP_162495248.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 15940.0e+00
WP_030145955.1 RNA polymerase sigma factor SigF [Streptomyces violaceorubid... 15930.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear