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IDSCO5357 TypeCDS
From2841294 nt length2085
To2839210 aa length694
Gene pI9.6
DefinitionSCBAC5H2.26 rho transcription terminator factor (fragment) M.W (Da)75146
Note2SC6G5.01 AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2915 putative transcription termination factor Rho6650.0e+00
sgrSGR_2179 putative transcription termination factor Rho7430.0e+00
samSAM23877_5101 Transcription termination factor Rho10300.0e+00
scabSCAB28931 putative transcription termination factor Rho9200.0e+00
saceSACE_6295 putative transcription termination factor Rho5618.0e-161
nfarnfa10520 putative transcription termination factor Rho5384.0e-154

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Rho_RNA_bind1Rho termination factor, RNA-binding domain321-395101.12.1e-29

ATP-synt_ab1ATP synthase alpha/beta family, nucleotide-binding domain426-63074.76.9e-21

Rho_N1Rho termination factor, N-terminal domain40-8046.72e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_189739062.1 transcription termination factor Rho [Streptomyces tendae] >... 20720.0e+00
WP_167307778.1 transcription termination factor Rho [Streptomyces tendae] 20720.0e+00
WP_127893719.1 transcription termination factor Rho [Streptomyces sp. S10(2... 20720.0e+00
WP_011030205.1 MULTISPECIES: transcription termination factor Rho [Streptom... 20710.0e+00
NEV87789.1 transcription termination factor Rho [Streptomyces tendae] 20710.0e+00
WP_030187226.1 transcription termination factor Rho [Streptomyces violaceor... 20710.0e+00
WP_161381762.1 MULTISPECIES: transcription termination factor Rho [unclassi... 20710.0e+00
WP_016327276.1 MULTISPECIES: transcription termination factor Rho [Streptom... 20700.0e+00
WP_202493658.1 MULTISPECIES: transcription termination factor Rho [Streptom... 20700.0e+00
WP_030868241.1 transcription termination factor Rho [Streptomyces violaceor... 20700.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear