| ID | SCO5572
| Type | CDS
|
| From | 2597521
| nt length | 819
|
| To | 2596703
| aa length | 272
|
| Gene |
| pI | 4.8
|
| Definition | ribonuclease III
| M.W (Da) | 28696
|
| Note | SC7A1.16
| AseI frg. | B
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_2665 putative ribonuclease III | 379 | 2.0e-106
|
| sgr | SGR_1908 putative ribonuclease III | 415 | 4.0e-117
|
| sam | SAM23877_5325 Ribonuclease 3 | 478 | 1.0e-173
|
| scab | SCAB26391 putative ribonuclease III | 454 | 5.0e-129
|
| sace | SACE_6100 ribonuclease III | 224 | 1.0e-59
|
| nfar | nfa41840 putative RNase III | 225 | 3.0e-60
|
*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribonucleas_3_3 | 1 | Ribonuclease-III-like | 40-165 | 132.3 | 1e-38
|
| Ribonuclease_3 | 1 | Ribonuclease III domain | 63-153 | 86.9 | 1.1e-24
|
| dsrm | 1 | Double-stranded RNA binding motif | 181-244 | 63.4 | 2.1e-17
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|