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IDSCO6520 TypeCDS
From1457426 nt length801
To1456626 aa length266
Gene pI5.44
Definitionputative RNA polymerase sigma factor M.W (Da)30005
NoteSC5C7.05 AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1873 putative RNA polymerase sigma factor4053.0e-114
sgrSGR_6446 putative RNA polymerase sigma factor3223.0e-89
samSAM23877_6227 RNA polymerase sigma factor SigF4806.0e-175
scabSCAB17181 putative RNA polymerase sigma factor4515.0e-128

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4208-25672.51.3e-20

Sigma70_r21Sigma-70 region 241-10965.03.5e-18

Sigma70_r4_21Sigma-70, region 4201-24944.86.5e-12

Sigma70_r31Sigma-70 region 3119-17336.14.7e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011030982.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13000.0e+00
EFD65524.1 RNA polymerase sigma factor [Streptomyces lividans TK24] 12972.9e-180
WP_016327756.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12955.7e-180
WP_121713281.1 RNA polymerase sigma factor SigF [Streptomyces sp. E5N91] 12877.7e-179
WP_109028505.1 RNA polymerase sigma factor SigF [Streptomyces rubrogriseus]... 12773.0e-177
MYS76549.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomyces s... 12671.0e-175
WP_115745166.1 RNA polymerase sigma factor SigF [Streptomyces sp. CB09001] ... 12661.5e-175
WP_087806046.1 RNA polymerase sigma factor SigF [Streptomyces sp. CS113] >g... 12652.0e-175
WP_226025968.1 RNA polymerase sigma factor SigF [Streptomyces hyderabadensi... 12652.1e-175
WP_189744789.1 RNA polymerase sigma factor SigF [Streptomyces tendae] >dbj 12642.7e-175

PSORT result

LocalizationCertaintyPSORT said
Not Clear