-- | --

IDSCO6743 TypeCDS
From1165658 nt length2343
To1168000 aa length780
Gene pI6.77
Definitionputative transcriptional accessory protein M.W (Da)84352
NoteSC5F2A.26c AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1669 putative transcription accessory protein12240.0e+00
sgrSGR_984 putative transcription accessory protein12290.0e+00
samSAM23877_6393 transcriptional accessory protein13720.0e+00
scabSCAB13181 putative transcription accessory protein13230.0e+00
saceSACE_5346 RNA binding S1:resolvase, RNase H-like fold10630.0e+00
nfarnfa41490 putative RNA-binding protein9440.0e+00

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Tex_N1Tex-like protein N-terminal domain13-196223.81e-66

Tex_YqgF1Tex protein YqgF-like domain328-453176.13.3e-52

HHH_31Helix-hairpin-helix motif493-55797.24.2e-28

S11S1 RNA binding domain652-72267.49.1e-19

HHH_71Helix-hairpin-helix motif466-55829.66.1e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_093457451.1 MULTISPECIES: RNA-binding transcriptional accessory protein ... 33020.0e+00
WP_189285457.1 RNA-binding transcriptional accessory protein [Streptomyces ... 32970.0e+00
WP_011031148.1 MULTISPECIES: RNA-binding transcriptional accessory protein ... 32970.0e+00
WP_016327854.1 MULTISPECIES: RNA-binding transcriptional accessory protein ... 32970.0e+00
WP_210985243.1 helix-hairpin-helix domain-containing protein [Streptomyces ... 32960.0e+00
EFD65319.1 transcriptional accessory protein [Streptomyces lividans TK24] 32940.0e+00
WP_193487468.1 RNA-binding transcriptional accessory protein [Streptomyces ... 32900.0e+00
WP_121715919.1 RNA-binding transcriptional accessory protein [Streptomyces ... 32720.0e+00
WP_109028691.1 RNA-binding transcriptional accessory protein [Streptomyces ... 32480.0e+00
WP_115745358.1 RNA-binding transcriptional accessory protein [Streptomyces ... 32430.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear