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IDSCO7314 TypeCDS
From546967 nt length900
To546068 aa length299
Gene pI7.77
Definitionprobable RNA polymerase sigma factor M.W (Da)33108
NoteSC5F8.24 AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
samSAM23877_0896 RNA polymerase sigma factor SigF5090.0e+00
scabSCAB85981 putative RNA polymerase sigma factor4191.0e-118

*sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 256-12464.54.9e-18

Sigma70_r41Sigma-70, region 4223-27060.57.3e-17

Sigma70_r4_21Sigma-70, region 4221-26835.64.9e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011031582.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 15410.0e+00
WP_003971827.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 14400.0e+00
AIJ11572.2 RNA polymerase sigma factor [Streptomyces lividans TK24] >gb 14370.0e+00
WP_030866784.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 14370.0e+00
WP_106518610.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 14330.0e+00
MYS75085.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomyces s... 14270.0e+00
WP_109028940.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 14270.0e+00
WP_115745652.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 13960.0e+00
WP_212729231.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 13830.0e+00
WP_134655713.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 13800.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear