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IDSCO7341 TypeCDS
From511752 nt length792
To512543 aa length263
GenesigG pI6.43
Definitionputative RNA polymerase secondary sigma factor M.W (Da)29422
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7400 putative RNA polymerase sigma factor3754.0e-105
samSAM23877_0867 RNA polymerase sigma factor SigF5120.0e+00

*avm, Streptomyces avermitilis; sam, Streptomyces ambofaciens ATCC 23877;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 241-11066.41.3e-18

Sigma70_r41Sigma-70, region 4207-25665.22.5e-18

Sigma70_r4_21Sigma-70, region 4202-24539.92.2e-10

Sigma70_r31Sigma-70 region 3121-17440.22.5e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011031598.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 11903.8e-164
WP_121709901.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11861.5e-163
WP_003971800.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 11861.7e-163
GHA65953.1 RNA polymerase sigma factor [Streptomyces anthocyanicus] 11892.6e-163
PSK44624.1 RNA polymerase sigma factor SigF [Streptomyces sp. 111WW2] >gb 11893.3e-163
AIJ11545.1 RNA polymerase secondary sigma factor [Streptomyces lividans TK24... 11869.3e-163
EOY52264.1 RNA polymerase secondary sigma factor [Streptomyces lividans 1326... 11881.1e-162
WP_109032119.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11782.9e-162
WP_115746749.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11764.7e-162
WP_127895698.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 11731.5e-161

PSORT result

LocalizationCertaintyPSORT said
Not Clear