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IDSGR_1634 TypeCDS
From1927882 nt length648
To1928529 aa length215
Gene pI11.39
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23593
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO5934 putative sigma factor1241.0e-29
samSAM23877_0594 putative RNA polymerase ECF-subfamily sigma factor2731.0e-94
scabSCAB52551 putative RNA polymerase sigma factor1823.0e-47

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4125-17454.46.7e-15

Sigma70_r21Sigma-70 region 223-9044.96.6e-12

Sigma70_r41Sigma-70, region 4127-17643.61.4e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012378680.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >lc... 10935.9e-151
WP_164362290.1 RNA polymerase sigma factor [Streptomyces griseus] >gb 10874.2e-150
WP_003965676.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 10814.5e-149
WP_215104759.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9382.4e-127
SCD61144.1 RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. O... 8908.1e-118
WP_217311141.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8185.4e-109
WP_079054062.1 RNA polymerase sigma factor [Streptomyces graminilatus] 7682.2e-101
NKY12832.1 RNA polymerase sigma factor [Streptomyces somaliensis DSM 40738] 7194.9e-94
WP_205084802.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6882.7e-89
WP_073804903.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 6883.2e-89

PSORT result

LocalizationCertaintyPSORT said
Not Clear