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IDSGR_1887 TypeCDS
From2236318 nt length597
To2235722 aa length198
GenerimM pI3.94
Definitionputative 16S rRNA processing protein M.W (Da)21219
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2642 putative 16S rRNA processing protein2575.0e-70
coelSCO5593 hypothetical protein2983.0e-82
samSAM23877_5349 Ribosome maturation factor RimM2803.0e-98
kanCP970_12180 ribosome maturation factor RimM3036.0e-107
scabSCAB26171 putative 16S rRNA processing protein2784.0e-76
saceSACE_6051 16S rRNA processing protein1471.0e-36
nfarnfa41550 putative 16S rRNA processing protein1292.0e-31

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RimM1RimM N-terminal domain5-8379.81.2e-22

PRC1PRC-barrel domain93-16635.57.3e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003965957.1 MULTISPECIES: ribosome maturation factor RimM [Streptomyces]... 9031.6e-122
MYR12856.1 ribosome maturation factor RimM [Streptomyces sp. SID724] 8961.8e-121
WP_202464426.1 MULTISPECIES: ribosome maturation factor RimM [Streptomyces] 8891.9e-120
WP_219205143.1 ribosome maturation factor RimM [Streptomyces griseus] >lcl 8883.1e-120
WP_202465122.1 ribosome maturation factor RimM [Streptomyces sp. SID724] 8822.2e-119
WP_118904749.1 ribosome maturation factor RimM [Streptomyces globisporus] >... 8805.1e-119
WP_097946507.1 ribosome maturation factor RimM [Streptomyces sp. ms115] 8771.5e-118
WP_010061964.1 MULTISPECIES: ribosome maturation factor RimM [Streptomyces]... 8761.9e-118
WP_069740207.1 MULTISPECIES: ribosome maturation factor RimM [Streptomyces]... 8753.2e-118
WP_107413556.1 ribosome maturation factor RimM [Streptomyces sp. CS149] >gb... 8728.0e-118

PSORT result

LocalizationCertaintyPSORT said
Not Clear