| ID | SGR_1908
| Type | CDS
|
| From | 2261199
| nt length | 825
|
| To | 2260375
| aa length | 274
|
| Gene | rnc
| pI | 4.77
|
| Definition | putative ribonuclease III
| M.W (Da) | 28679
|
| Note |
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_2665 putative ribonuclease III | 359 | 2.0e-100
|
| coel | SCO5572 ribonuclease III | 424 | 7.0e-120
|
| sam | SAM23877_5325 Ribonuclease 3 | 416 | 3.0e-149
|
| kan | CP970_12295 ribonuclease III | 412 | 9.0e-148
|
| scab | SCAB26391 putative ribonuclease III | 415 | 4.0e-117
|
| sace | SACE_6100 ribonuclease III | 245 | 3.0e-66
|
| nfar | nfa41840 putative RNase III | 248 | 5.0e-67
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribonucleas_3_3 | 1 | Ribonuclease-III-like | 33-158 | 131.8 | 1.4e-38
|
| Ribonuclease_3 | 1 | Ribonuclease III domain | 56-146 | 87.0 | 1e-24
|
| dsrm | 1 | Double-stranded RNA binding motif | 174-238 | 60.6 | 1.6e-16
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|