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IDSGR_2179 TypeCDS
From2581163 nt length2046
To2579118 aa length681
Generho1 pI9.62
Definitionputative transcription termination factor Rho M.W (Da)73299
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2915 putative transcription termination factor Rho7620.0e+00
coelSCO5357 SCBAC5H2.26 rho transcription terminator factor (fragment)8650.0e+00
samSAM23877_5101 Transcription termination factor Rho7460.0e+00
kanCP970_13725 transcription termination factor Rho7540.0e+00
scabSCAB28931 putative transcription termination factor Rho7420.0e+00
saceSACE_6295 putative transcription termination factor Rho6630.0e+00
nfarnfa10520 putative transcription termination factor Rho6340.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Rho_RNA_bind1Rho termination factor, RNA-binding domain307-381103.53.7e-30

ATP-synt_ab1ATP synthase alpha/beta family, nucleotide-binding domain412-61671.85.5e-20

Rho_N1Rho termination factor, N-terminal domain40-7745.83.7e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_093562757.1 transcription termination factor Rho [Streptomyces sp. OspMP... 20620.0e+00
WP_073802669.1 MULTISPECIES: transcription termination factor Rho [unclassi... 20620.0e+00
WP_097911076.1 transcription termination factor Rho [Streptomyces sp. b84] 20620.0e+00
WP_050360402.1 transcription termination factor Rho [Streptomyces europaeis... 20620.0e+00
WP_217226485.1 transcription termination factor Rho [Streptomyces anulatus] 20620.0e+00
WP_003966266.1 MULTISPECIES: transcription termination factor Rho [Streptom... 20620.0e+00
WP_098892655.1 transcription termination factor Rho [Streptomyces sp. or3] 20620.0e+00
WP_073957657.1 transcription termination factor Rho [Streptomyces sp. TSRI0... 20620.0e+00
WP_069755411.1 MULTISPECIES: transcription termination factor Rho [unclassi... 20620.0e+00
WP_097955736.1 MULTISPECIES: transcription termination factor Rho [unclassi... 20620.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear