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IDSGR_2271 TypeCDS
From2686477 nt length957
To2687433 aa length318
GenesigH pI5
DefinitionRNA polymerase sigma factor M.W (Da)35240
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3013 putative RNA polymerase sigma factor, sigH4278.0e-121
coelSCO5243 sig1 RNA polymerase sigma factor4771.0e-135
samSAM23877_5033 RNA polymerase sigma factor4774.0e-171
kanCP970_14305 RNA polymerase sigma factor SigF5010.0e+00
scabSCAB30101 putative RNA polymerase sigma factor4854.0e-138
saceSACE_5686 RNA polymerase sigma factor2819.0e-77
nfarnfa36050 putative sigma factor2418.0e-65

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 298-16775.71.6e-21

Sigma70_r41Sigma-70, region 4263-31268.91.8e-19

Sigma70_r31Sigma-70 region 3181-23862.72.3e-17

Sigma70_r4_21Sigma-70, region 4263-31040.81.2e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EGE41867.1 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily [Streptomyc... 16350.0e+00
BAC55891.1 RNA polymerase sigma factor [Streptomyces griseus subsp. griseus... 16270.0e+00
WP_202476414.1 RNA polymerase sigma factor SigF [Streptomyces sp. SID4928] 16220.0e+00
WP_202463173.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 16220.0e+00
WP_203608512.1 RNA polymerase sigma factor SigF [Streptomyces anulatus] 16160.0e+00
EFE77511.1 RNA polymerase sigma factor [Streptomyces filamentosus NRRL 15998... 16020.0e+00
WP_203686319.1 RNA polymerase sigma factor SigF [Streptomyces sp. SID14515] 16010.0e+00
RDL08716.1 RNA polymerase sigma-28 (SigD/FliA/WhiG) subunit [Streptomyces sp... 16010.0e+00
SCE61780.1 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG [Streptomyces s... 15990.0e+00
RPK91419.1 RNA polymerase sigma factor SigF [Streptomyces sp. ADI98-10] 15960.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear