-- | --

IDSGR_2378 TypeCDS
From2809598 nt length648
To2808951 aa length215
Genesig23 pI6.16
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23926
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3117 putative RNA polymerase ECF-subfamily sigma factor3414.0e-95
coelSCO5147 putative ECF-subfamily sigma factor3778.0e-106
samSAM23877_4926 RNA polymerase sigma factor SigE3747.0e-134
kanCP970_14895 RNA polymerase sigma factor SigE3699.0e-132
scabSCAB31151 putative RNA polymerase sigma factor3746.0e-105
saceSACE_1037 putative ECF family RNA polymerase sigma factor2545.0e-69
nfarnfa47290 putative sigma factor2543.0e-69

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 236-10173.86.2e-21

Sigma70_r4_21Sigma-70, region 4134-18562.22.5e-17

Sigma70_r41Sigma-70, region 4138-18749.02.9e-13

Sigma70_ECF1ECF sigma factor87-19021.80.00013

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
BAG19207.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces... 11335.3e-157
WP_003966488.1 RNA polymerase sigma factor SigE [Streptomyces sp. McG3] >gb... 11284.3e-156
KQX37629.1 RNA polymerase subunit sigma [Streptomyces sp. Root1295] >gb 11264.9e-156
APS23563.1 RNA polymerase sigma factor SigE [Streptomyces sp. Tue 6075] >gb 11264.9e-156
ALU98265.1 RNA polymerase subunit sigma [Streptomyces globisporus C-1027] >g... 11266.5e-156
ROV65950.1 RNA polymerase sigma factor SigE [Streptomyces globisporus] 11276.9e-156
MYT76920.1 RNA polymerase sigma factor SigE [Streptomyces sp. SID8364] >emb 11251.5e-155
WP_172595271.1 MULTISPECIES: RNA polymerase sigma factor SigE [Streptomyces... 11271.6e-155
WP_097933165.1 MULTISPECIES: RNA polymerase sigma factor SigE [unclassified... 11241.6e-155
WP_084749099.1 RNA polymerase sigma factor SigE [Kitasatospora albolonga] >... 11241.8e-155

PSORT result

LocalizationCertaintyPSORT said
Not Clear