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IDSGR_2576 TypeCDS
From3038879 nt length534
To3039412 aa length177
Genesig59 pI11.58
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)19099
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3304 putative RNA polymerase ECF-subfamily sigma factor1232.0e-29
coelSCO4960 hypothetical protein1471.0e-36
samSAM23877_4776 putative sigma factor1251.0e-37
kanCP970_15810 RNA polymerase subunit sigma-701548.0e-49
scabSCAB34351 putative RNA polymerase sigma factor1401.0e-34

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4101-14932.15.5e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_030705167.1 MULTISPECIES: RNA polymerase [Streptomyces] >gb 4026.3e-47
BAG19405.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces... 4001.2e-46
WP_161184924.1 RNA polymerase, partial [Streptomyces sp. SID724] >gb 3841.4e-44
WP_215107487.1 RNA polymerase [Streptomyces sp. McG3] >lcl 3842.5e-44
WP_093562936.1 RNA polymerase, partial [Streptomyces sp. OspMP-M43] >emb 3797.1e-44
EGE42172.1 RNA polymerase ECF-subfamily sigma factor [Streptomyces sp. ACT-1... 3817.3e-44
WP_042498344.1 MULTISPECIES: RNA polymerase [Streptomyces] >emb 3791.5e-43
WP_219205373.1 RNA polymerase [Streptomyces griseus] >lcl 3756.2e-43
KND30481.1 RNA polymerase [Streptomyces europaeiscabiei] 3731.1e-42
WP_098021920.1 RNA polymerase, partial [Streptomyces sp. wa1071] 3673.4e-42

PSORT result

LocalizationCertaintyPSORT said
Not Clear