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IDSGR_2795 TypeCDS
From3306460 nt length645
To3307104 aa length214
Genesig50 pI8.91
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)23278
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6337 putative RNA polymerase ECF-subfamily sigma factor2323.0e-62
kanCP970_32040 RNA polymerase sigma factor1811.0e-58
scabSCAB52511 putative RNA polymerase sigma factor2431.0e-65
saceSACE_6402 RNA polymerase ECF-subfamily sigma factor1361.0e-33

*avm, Streptomyces avermitilis; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4141-19049.62e-13

Sigma70_r21Sigma-70 region 243-10845.25.4e-12

Sigma70_r41Sigma-70, region 4144-19342.23.9e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012379452.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gr... 8871.3e-119
WP_093684149.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8829.0e-119
WP_003966925.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8767.1e-118
WP_215111147.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8541.4e-114
WP_097866710.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8512.8e-114
WP_097930683.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8471.3e-113
WP_097965093.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8461.5e-113
WP_097955921.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8471.6e-113
NEB84447.1 sigma-70 family RNA polymerase sigma factor [Streptomyces anulatu... 8434.6e-113
WP_073740392.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8435.0e-113

PSORT result

LocalizationCertaintyPSORT said
Not Clear