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IDSGR_2869 TypeCDS
From3374400 nt length3516
To3370885 aa length1171
GenerpoB pI4.59
Definitionputative RNA polymerase beta subunit M.W (Da)129327
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4914 RNA polymerase beta subunit21830.0e+00
coelSCO4654 DNA-directed RNA polymerase beta chain22770.0e+00
samSAM23877_4473 DNA-directed RNA polymerase subunit beta22870.0e+00
kanCP970_17425 DNA-directed RNA polymerase subunit beta22890.0e+00
scabSCAB37191 RNA polymerase beta subunit22560.0e+00
saceSACE_6854 DNA-directed RNA polymerase, beta subunit18370.0e+00
nfarnfa50990 putative RNA polymerase beta subunit18000.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb2_61RNA polymerase Rpb2, domain 6640-1057517.71.8e-155

RNA_pol_Rpb2_21RNA polymerase Rpb2, domain 2179-375104.74.1e-30

RNA_pol_Rpb2_31RNA polymerase Rpb2, domain 3434-50299.29.5e-29

RNA_pol_Rpb2_71RNA polymerase Rpb2, domain 71059-113395.41.9e-27

RNA_pol_Rpb2_451RNA polymerase beta subunit external 1 domain512-57889.51.2e-25

RNA_pol_Rpb2_11RNA polymerase beta subunit76-41974.95.3e-21

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
BAG19698.1 RNA polymerase beta subunit [Streptomyces griseus subsp. griseus... 58280.0e+00
EHM31544.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. W007] 57990.0e+00
APD71119.1 RpoB, partial [Streptomyces sp.] 57930.0e+00
WP_003966995.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57850.0e+00
WP_010058810.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57830.0e+00
WP_030578113.1 DNA-directed RNA polymerase subunit beta [Streptomyces globi... 57800.0e+00
APD71103.1 RpoB, partial [Streptomyces sp.] >gb 57800.0e+00
WP_053624338.1 DNA-directed RNA polymerase subunit beta [Streptomyces sp. N... 57790.0e+00
WP_118901857.1 DNA-directed RNA polymerase subunit beta [Streptomyces globi... 57790.0e+00
WP_030084309.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 57780.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear