-- | --

IDSGR_2995 TypeCDS
From3496654 nt length510
To3497163 aa length169
Gene pI10.47
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)18747
Note AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
saceSACE_7154 RNA polymerase ECF sigma factor1222.0e-29

*sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4104-15550.01.6e-13

Sigma70_r41Sigma-70, region 4108-15742.53.1e-11

Sigma70_r21Sigma-70 region 217-7631.11.3e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012379567.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7173.4e-95
WP_161185818.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7113.6e-94
WP_030702270.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7071.1e-93
KUJ64753.1 RNA polymerase subunit sigma-24 [Streptomyces albus subsp. albus]... 7071.6e-93
EGE42562.1 RNA polymerase, sigma-24 subunit, ECF subfamily [Streptomyces sp.... 6968.0e-92
WP_097912721.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 6905.8e-91
WP_079190976.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 6896.5e-91
OLO31601.1 RNA polymerase subunit sigma-24 [Streptomyces sp. MNU77] 6891.1e-90
WP_079191959.1 SigE family RNA polymerase sigma factor [Streptomyces sp. CB... 6852.6e-90
WP_217223879.1 SigE family RNA polymerase sigma factor [Streptomyces anulat... 6852.8e-90

PSORT result

LocalizationCertaintyPSORT said
Not Clear