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IDSGR_3603 TypeCDS
From4214215 nt length564
To4213652 aa length187
Genesig36 pI8.07
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20619
Note AseI frg.M
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4207 putative RNA polymerase ECF-subfamily sigma factor2483.0e-67
coelSCO4005 putative RNA polymerase sigma factor2676.0e-73
samSAM23877_3676 RNA polymerase sigma factor2801.0e-97
kanCP970_22040 SigE family RNA polymerase sigma factor3032.0e-107
scabSCAB47081 putative RNA polymerase sigma factor2853.0e-78
saceSACE_0128 RNA polymerase ECF sigma factor1152.0e-27

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4125-17763.59.6e-18

Sigma70_r41Sigma-70, region 4133-17951.83.8e-14

Sigma70_r21Sigma-70 region 233-9734.01.7e-08

Sigma70_ECF1ECF sigma factor81-16923.44.2e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_097878005.1 SigE family RNA polymerase sigma factor [Streptomyces sp. ms... 8611.4e-116
WP_030077401.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8611.7e-116
WP_012380021.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8611.9e-116
WP_032781875.1 SigE family RNA polymerase sigma factor [Streptomyces sp. JS... 8602.0e-116
WP_032764667.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8602.4e-116
WP_097885654.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 8602.6e-116
WP_086673777.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8593.3e-116
WP_030707270.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8593.4e-116
GHF45881.1 hypothetical protein GCM10010504_12230 [Streptomyces griseus] 8623.5e-116
WP_107412439.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8593.6e-116

PSORT result

LocalizationCertaintyPSORT said
Not Clear