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IDSGR_3687 TypeCDS
From4311938 nt length717
To4312654 aa length238
Genesig37 pI6.73
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)25195
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4303 putative RNA polymerase ECF-subfamily sigma factor3062.0e-84
coelSCO3892 putative RNA polymerase sigma factor3407.0e-95
samSAM23877_3765 putative RNA polymerase sigma factor3375.0e-119
kanCP970_21480 RNA polymerase sigma factor SigM3482.0e-123
scabSCAB45951 putative RNA polymerase sigma factor3416.0e-95
saceSACE_7382 putative RNA polymerase sigma factor1494.0e-37
nfarnfa56600 putative sigma factor1523.0e-38

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9665.13.1e-18

Sigma70_r4_21Sigma-70, region 4129-18156.51.5e-15

Sigma70_r41Sigma-70, region 4134-18133.42.1e-08

Sigma70_ECF1ECF sigma factor12-18129.94.3e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012380077.1 RNA polymerase sigma factor SigM [Streptomyces griseus] >lcl... 12122.9e-168
MYR16018.1 RNA polymerase sigma factor SigM [Streptomyces sp. SID724] 12098.5e-168
WP_003967872.1 RNA polymerase sigma factor SigM [Streptomyces sp. ACT-1] >g... 12071.4e-167
WP_030701360.1 MULTISPECIES: RNA polymerase sigma factor SigM [Streptomyces... 11974.6e-166
WP_093685147.1 RNA polymerase sigma factor SigM [Streptomyces sp. MnatMP-M7... 11931.9e-165
WP_073958279.1 MULTISPECIES: RNA polymerase sigma factor SigM [unclassified... 11653.5e-161
WP_057664403.1 RNA polymerase sigma factor SigM [Streptomyces anulatus] >gb... 11644.9e-161
WP_056702141.1 MULTISPECIES: RNA polymerase sigma factor SigM [unclassified... 11611.4e-160
WP_219611105.1 RNA polymerase sigma factor SigM [Streptomyces anulatus] >gb... 11611.6e-160
WP_097931297.1 MULTISPECIES: RNA polymerase sigma factor SigM [unclassified... 11602.3e-160

PSORT result

LocalizationCertaintyPSORT said
Not Clear