-- | --

IDSGR_4025 TypeCDS
From4712590 nt length1407
To4711184 aa length468
Gene pI11.56
Definitionputative transposase M.W (Da)52375
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_61 putative IS605 family IS1136A0-like transposase2932.0e-80
coelSCO3714 putative transposase2395.0e-64
kanCP970_10145 transposase1016.0e-24
scabSCAB20651 2589.0e-70
saceSACE_4573 putative IS200-like transposase2759.0e-75
nfarnfa15170 putative transposase2386.0e-64

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

OrfB_IS6051Probable transposase244-34179.12.8e-22

OrfB_Zn_ribbon1Putative transposase DNA-binding domain364-43266.71.2e-18

HTH_OrfB_IS6051Helix-turn-helix domain53-9562.22.1e-17

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012380313.1 RNA-guided endonuclease TnpB family protein [Streptomyces gr... 19120.0e+00
WP_003968198.1 MULTISPECIES: RNA-guided endonuclease TnpB family protein [S... 18560.0e+00
WP_093684279.1 RNA-guided endonuclease TnpB family protein [Streptomyces sp... 18390.0e+00
WP_202464217.1 RNA-guided endonuclease TnpB family protein [Streptomyces sp... 18350.0e+00
MYR13834.1 IS200/IS605 family element transposase accessory protein TnpB [St... 18270.0e+00
WP_202465270.1 RNA-guided endonuclease TnpB family protein [Streptomyces sp... 18210.0e+00
WP_202549714.1 RNA-guided endonuclease TnpB family protein [Streptomyces sp... 17900.0e+00
WP_202476597.1 RNA-guided endonuclease TnpB family protein [Streptomyces sp... 17790.0e+00
WP_097922440.1 MULTISPECIES: RNA-guided endonuclease TnpB family protein [u... 17750.0e+00
WP_097910186.1 RNA-guided endonuclease TnpB family protein [Streptomyces sp... 17730.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear