SGR_4151

ID SGR_4151 Type CDS
From 4856725 nt length 777
To 4855949 aa length 258
Gene adsA pI 9.51
Definition RNA polymerase ECF-subfamily sigma factor M.W (Da) 28219
Note AseI frg. D
SignalP v.4.0 Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*	Reciprocally best hit to	Score	E-value
avm	SAVERM_4735 putative RNA polymerase ECF-subfamily sigma factor	420	1.0e-118
coel	SCO3323 putative RNA polymerase sigma factor	349	2.0e-97
sam	SAM23877_4236 ECF sigma factor	460	6.0e-167
kan	CP970_18750 sigma-70 family RNA polymerase sigma factor	471	3.0e-171
scab	SCAB39121 putative RNA polymerase ECF-subfamily sigma factor	471	3.0e-134
sace	SACE_6951 putative RNA polymerase sigma factor	215	4.0e-57

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result

Model No. Description Position (aa) Score E-value

Sigma70_r2 1 Sigma-70 region 2 99-166 64.6 4.7e-18

Sigma70_r4_2 1 Sigma-70, region 4 198-249 51.2 6.7e-14

Sigma70_r4 1 Sigma-70, region 4 204-249 38.7 4.6e-10

Sigma70_ECF 1 ECF sigma factor 82-239 36.6 3.8e-09

BLAST search result (top 10 hits)

ID Description Score E-value
MYW29867.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 1207 7.2e-167
WP_096633006.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1207 7.6e-167
WP_026241604.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1206 8.6e-167
WP_097870937.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1206 1.1e-166
WP_003968333.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1206 1.1e-166
WP_219610610.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 1204 1.9e-166
WP_103534382.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1204 2.0e-166
WP_019764951.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 1203 3.0e-166
WP_222316160.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ca... 1203 3.2e-166
WP_145500418.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 1201 4.9e-166

PSORT result

Localization Certainty PSORT said
Not Clear

ID	SGR_4151	Type	CDS
From	4856725	nt length	777
To	4855949	aa length	258
Gene	adsA	pI	9.51
Definition	RNA polymerase ECF-subfamily sigma factor	M.W (Da)	28219
Note		AseI frg.	D
SignalP v.4.0	Non-secretory protein \| plot	Category

Model	No.	Description	Position (aa)	Score	E-value
Sigma70_r2	1	Sigma-70 region 2	99-166	64.6	4.7e-18
Sigma70_r4_2	1	Sigma-70, region 4	198-249	51.2	6.7e-14
Sigma70_r4	1	Sigma-70, region 4	204-249	38.7	4.6e-10
Sigma70_ECF	1	ECF sigma factor	82-239	36.6	3.8e-09