-- | --

IDSGR_4422 TypeCDS
From5168520 nt length3534
To5172053 aa length1177
Genemfd pI5.01
Definitionputative transcriptional-repair coupling factor M.W (Da)128541
Note AseI frg.C
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3549 putative transcriptional-repair coupling factor20010.0e+00
coelSCO3109 putative transcriptional-repair coupling factor20860.0e+00
samSAM23877_3158 Transcription-repair-coupling factor20870.0e+00
kanCP970_25820 transcription-repair coupling factor21060.0e+00
scabSCAB54321 putative transcriptional-repair coupling factor20780.0e+00
saceSACE_0826 transcription-repair coupling factor14230.0e+00
nfarnfa48750 putative transcription-repair coupling factor13040.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CarD_CdnL_TRCF1CarD-like/TRCF domain500-599108.02.7e-31

TRCF1TRCF domain1033-111584.83.6e-24

DEAD1DEAD/DEAH box helicase631-79162.73.2e-17

Helicase_C1Helicase conserved C-terminal domain834-93356.82.4e-15

ResIII1Type III restriction enzyme, res subunit630-78526.45.3e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012380593.1 MULTISPECIES: transcription-repair coupling factor [Streptom... 55370.0e+00
WP_030705472.1 transcription-repair coupling factor [Streptomyces griseus] 55330.0e+00
WP_093685607.1 MULTISPECIES: transcription-repair coupling factor [unclassi... 55310.0e+00
WP_003968639.1 MULTISPECIES: transcription-repair coupling factor [unclassi... 55280.0e+00
WP_161185208.1 transcription-repair coupling factor [Streptomyces sp. SID72... 55230.0e+00
WP_073779720.1 transcription-repair coupling factor [Streptomyces sp. TSRI0... 54900.0e+00
WP_097932789.1 MULTISPECIES: transcription-repair coupling factor [unclassi... 54900.0e+00
WP_097912931.1 transcription-repair coupling factor [Streptomyces sp. b84] 54900.0e+00
WP_097955798.1 MULTISPECIES: transcription-repair coupling factor [unclassi... 54880.0e+00
WP_097922801.1 transcription-repair coupling factor [Streptomyces sp. wa106... 54870.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear