| ID | SGR_4638
| Type | CDS
|
| From | 5447009
| nt length | 738
|
| To | 5447746
| aa length | 245
|
| Gene | rphA
| pI | 5.45
|
| Definition | putative ribonuclease PH
| M.W (Da) | 26045
|
| Note |
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_5170 putative ribonuclease PH | 409 | 2.0e-115
|
| coel | SCO2904 putative ribonuclease PH | 429 | 1.0e-121
|
| sam | SAM23877_2941 Ribonuclease PH | 420 | 8.0e-152
|
| kan | CP970_27315 ribonuclease PH | 435 | 2.0e-157
|
| scab | SCAB56731 putative ribonuclease PH | 429 | 1.0e-121
|
| sace | SACE_1212 ribonuclease PH | 300 | 9.0e-83
|
| nfar | nfa10950 putative RNase PH | 292 | 1.0e-80
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNase_PH | 1 | 3' exoribonuclease family, domain 1 | 11-141 | 88.1 | 6e-25
|
| RNase_PH_C | 1 | 3' exoribonuclease family, domain 2 | 161-226 | 43.0 | 3.1e-11
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|