| ID | SGR_4915
| Type | CDS
|
| From | 5791721
| nt length | 489
|
| To | 5792209
| aa length | 162
|
| Gene | rpiB
| pI | 5.73
|
| Definition | putative ribose-5-phosphate isomerase
| M.W (Da) | 17592
|
| Note |
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category |
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| avm | SAVERM_5426 putative ribose-5-phosphate isomerase | 267 | 4.0e-73
|
| coel | SCO2627 putative isomerase | 286 | 1.0e-78
|
| sam | SAM23877_2677 Ribose-5-phosphate isomerase B | 297 | 9.0e-106
|
| kan | CP970_28800 ribose-5-phosphate isomerase | 308 | 4.0e-110
|
| scab | SCAB59851 putative ribose-5-phosphate isomerase | 287 | 6.0e-79
|
| sace | SACE_1349 ribose 5-phosphate isomerase RpiB | 207 | 6.0e-55
|
| nfar | nfa13270 putative ribose 5-phosphate isomerase | 217 | 4.0e-58
|
*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LacAB_rpiB | 1 | Ribose/Galactose Isomerase | 3-142 | 155.4 | 7.6e-46
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_003969169.1 | MULTISPECIES: ribose-5-phosphate isomerase [Streptomyces] >g...
| 866 | 4.9e-118 |
| WP_010062974.1 | MULTISPECIES: ribose-5-phosphate isomerase [Streptomyces] >g...
| 860 | 3.6e-117 |
| WP_015608520.1 | MULTISPECIES: ribose-5-phosphate isomerase [Streptomyces] >g...
| 859 | 5.9e-117 |
| WP_047176607.1 | MULTISPECIES: ribose-5-phosphate isomerase [Streptomyces] >g...
| 858 | 6.4e-117 |
|
| 857 | 1.1e-116 |
| WP_073216685.1 | ribose-5-phosphate isomerase [Streptomyces sp. NBRC 110465]
| 857 | 1.2e-116 |
| WP_109165683.1 | MULTISPECIES: ribose-5-phosphate isomerase [Streptomyces] >g...
| 857 | 1.2e-116 |
| WP_032785035.1 | ribose-5-phosphate isomerase [Streptomyces sp. JS01] >gb
| 856 | 1.3e-116 |
| WP_030077742.1 | MULTISPECIES: ribose-5-phosphate isomerase [Streptomyces] >g...
| 855 | 1.9e-116 |
| WP_161263663.1 | ribose-5-phosphate isomerase [Streptomyces sp. SID2119] >gb
| 855 | 2.2e-116 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | |
|