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IDSGR_6019 TypeCDS
From7035570 nt length1668
To7037237 aa length555
GenesecD pI7.2
Definitionprotein-export membrane protein SecD M.W (Da)58069
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6837 putative preprotein translocase SecD subunit6131.0e-176
coelSCO1516 secD protein-export membrane protein7230.0e+00
samSAM23877_1567 Protein translocase subunit SecD7130.0e+00
kanCP970_36270 protein translocase subunit SecD7710.0e+00
scabSCAB74911 putative preprotein translocase SecD subunit6410.0e+00
saceSACE_2025 preprotein translocase subunit SecD3011.0e-82
nfarnfa36910 putative protein exporter membrane protein2851.0e-77

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

SecD_SecF1Protein export membrane protein340-51549.04.1e-13

MMPL1MMPL family319-53746.22.6e-12

Sec_GG1SecD/SecF GG Motif6-2722.07.5e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_202463875.1 MULTISPECIES: protein translocase subunit SecD [Streptomyces... 24400.0e+00
WP_003970332.1 MULTISPECIES: protein translocase subunit SecD [Streptomyces... 24380.0e+00
BAG22848.1 putative protein-export membrane protein SecD [Streptomyces gris... 24370.0e+00
WP_030704452.1 protein translocase subunit SecD [Streptomyces griseus] 24330.0e+00
WP_073870537.1 protein translocase subunit SecD [Streptomyces sp. CB00072] ... 24230.0e+00
WP_007457930.1 MULTISPECIES: protein translocase subunit SecD [unclassified... 24220.0e+00
WP_097916014.1 protein translocase subunit SecD [Streptomyces sp. b84] 24210.0e+00
WP_097922617.1 protein translocase subunit SecD [Streptomyces sp. wa1063] 24180.0e+00
WP_047175715.1 protein translocase subunit SecD [Streptomyces sp. MNU77] >g... 24150.0e+00
WP_097968203.1 MULTISPECIES: protein translocase subunit SecD [Streptomyces... 24100.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear