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IDSGR_6729 TypeCDS
From8043828 nt length1140
To8042689 aa length379
Generho2 pI10.65
Definitionputative transcription termination factor M.W (Da)40885
Note AseI frg.G
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1310 putative transcription termination factor4932.0e-140
coelSCO7051 putative transcription terminator factor5001.0e-142
samSAM23877_1040 transcription termination factor4854.0e-173
kanCP970_25155 transcription termination factor Rho5080.0e+00
scabSCAB83621 putative transcription termination factor4992.0e-142

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

ATP-synt_ab1ATP synthase alpha/beta family, nucleotide-binding domain116-31966.62.1e-18

Rho_RNA_bind1Rho termination factor, RNA-binding domain18-8455.43.7e-15

AAA_251AAA domain113-24238.29.5e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003971047.1 MULTISPECIES: transcription termination factor Rho [Streptom... 16460.0e+00
WP_093685253.1 MULTISPECIES: transcription termination factor Rho [unclassi... 16430.0e+00
WP_164360317.1 transcription termination factor Rho [Streptomyces griseus] ... 16390.0e+00
WP_161184699.1 transcription termination factor Rho [Streptomyces sp. SID72... 16360.0e+00
WP_030703228.1 transcription termination factor Rho [Streptomyces griseus] 16290.0e+00
WP_190009876.1 transcription termination factor Rho [Streptomyces anulatus]... 15680.0e+00
WP_057660965.1 MULTISPECIES: transcription termination factor Rho [Streptom... 15660.0e+00
WP_215101026.1 transcription termination factor Rho [Streptomyces sp. McG3]... 15660.0e+00
WP_219206954.1 transcription termination factor Rho, partial [Streptomyces ... 15650.0e+00
WP_073803176.1 MULTISPECIES: transcription termination factor Rho [unclassi... 15650.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear