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IDSGR_984 TypeCDS
From1160716 nt length2532
To1163247 aa length843
Gene pI6.91
Definitionputative transcription accessory protein M.W (Da)90123
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1669 putative transcription accessory protein11970.0e+00
coelSCO6743 putative transcriptional accessory protein12570.0e+00
samSAM23877_6393 transcriptional accessory protein12440.0e+00
kanCP970_04500 RNA-binding transcriptional accessory protein12650.0e+00
scabSCAB13181 putative transcription accessory protein12880.0e+00
saceSACE_5346 RNA binding S1:resolvase, RNase H-like fold11590.0e+00
nfarnfa41490 putative RNA-binding protein10360.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; kan, Streptomyces kanamyceticus ATCC 12853; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Tex_N1Tex-like protein N-terminal domain42-225222.23.1e-66

Tex_YqgF1Tex protein YqgF-like domain361-486175.16.5e-52

HHH_31Helix-hairpin-helix motif526-59098.32e-28

S11S1 RNA binding domain684-75569.91.5e-19

HHH_71Helix-hairpin-helix motif499-59128.61.3e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_012378219.1 RNA-binding transcriptional accessory protein [Streptomyces ... 33640.0e+00
WP_202465606.1 RNA-binding transcriptional accessory protein, partial [Stre... 33610.0e+00
WP_203638107.1 RNA-binding transcriptional accessory protein, partial [Stre... 33590.0e+00
SCE57841.1 uncharacterized protein GA0115261_108621, partial [Streptomyces ... 32920.0e+00
EGE40473.1 Tex-like protein [Streptomyces sp. ACT-1] 32900.0e+00
SBU91035.1 uncharacterized protein YW3DRAFT_00885 [Streptomyces sp. MnatMP-... 32740.0e+00
MYR16163.1 S1 RNA-binding domain-containing protein [Streptomyces sp. SID724... 31810.0e+00
WP_043392909.1 RNA-binding transcriptional accessory protein [Streptomyces ... 31810.0e+00
WP_030700477.1 RNA-binding transcriptional accessory protein [Streptomyces ... 31810.0e+00
WP_069455728.1 RNA-binding transcriptional accessory protein, partial [Stre... 31790.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear