HmmPfam for database
Select seq. file :
Actinobacteria
Streptomyces
firmicutes
swissprot
Database :
Cytochrome P450
Phytanoyl-CoA dioxygenase
non-haem dioxygenase PF14226
oxygenase domain of 2OGFeDO PF12851
Fatty acid desaturase PF00487
4Fe-4S single cluster domain of Ferredoxin I PF13370
4Fe-4S single cluster domain PF13459
Divergent 4Fe-4S mono-cluster PF06902
thymine dioxygenase JBP1 PF18526
C-5 cytosine-specific DNA methylase PF00145
R.Pab1 restriction endonuclease PF09522
Type III restriction enzyme, res subunit PF04851
Restriction endonuclease (Mrr_cat) PF04471
HNH endonuclease PF01844
HNH endonuclease PF13391
DUF262 GmrS
DUF1524 GmrD
Endo-alpha-N-acetylgalactosaminidase PF12905
Glycosyl hydrolase family 12 PF01670
Glycosyl hydrolase family 16 PF00722
Glycosyl hydrolase family 18 PF00704
Glycosyl hydrolase family 19 PF00182
Glycosyl hydrolase family 71 PF03659
Dyp-type peroxidase family PF04261
Neocarzinostat apoprotein
YcaO cyclodehydratase
Enediyne UnbV_ASPIC
Enediyne UnvL
ACPS
type A terpene synthase
type B terpene synthase
DUF2600
beta-carboline synthase A
beta-carboline synthase B
Protein kinase
Protein tyrosine kinase
FAD dependent oxidoreductase
Trp halogenase
ATP-grasp
ATP-grasp_2
ATP-grasp_3
ATP-grasp_4
ATP-grasp_5
ATPgrasp_Ter
ATPgrasp_YheCD
CP_ATPgrasp_2
E value :
1
0.1
0.01
0.001
0.0001
0.0000
0.000001
0.0000001
0.00000001
thread :
1
2
4
Collect seq. data is
here.
Copyright (C) by H. Ikeda, Ph.D
.
Copyright (C) by H. Ikeda, Ph.D.