Default D-cutoff values

If no values are given then the optimal default values are used ! (shown below)

The D-cutoff score is a combined value from both Signal-peptide and cleavage site prediction networks. A score above the a specified threshold (see below), will result in a positive prediction of a signal peptide. By default the following values are used for the SignalP-noTM and SignalP-TM networks for the organism types: Eukaryotes (euk), Gram-positive bacteria (gram+) and Gram-negative bacteria (gram-).

eukSignalP-noTM networks: 0.45
eukSignalP-TM networks: 0.50
gram+SignalP-noTM networks: 0.57
gram+SignalP-TM networks: 0.45
gram-SignalP-noTM networks: 0.57
gram-SignalP-TM networks: 0.51