Related Links
Third Party Streptomyces avermitilis DataBase

DDBJ -Genome Information Broker-

GTOP Genomes TO Protein structures and functions

GenomeNet -DBGET-

TIGR cmr -comprehensive microbial resource-

Microbial Genome Database for Comparative Analysis -MBGD-


GenomeAtlas -CBS-

Genius II -CBRC (AIST)-


Other Genome Projects of Streptomyces and related microorganisms

Streptomyces coelicolor A3(2) at Sanger Centre | other DB

Streptomyces griseus IFO13350 (streptomycin producer)

Streptomyces ambofaciens (industrial microorganism) at Genoscope

Streptomyces scabies at Sanger Centre

Nocardia farcinia at NIID

Rhodococcus sp. RHA1 at Genome Canada | other DB

Frankia alni (symbiotic nitrogen-fixing actinobacterium) at Genoscope

Saccharopolyspora erythraea at Univ. Cambridge

Mycobacterium tuberculosis [Sanger Centre|TubercuList|TIGR]

Gold Genomes OnLine Database
Other information

KEGG (Kyoto Encyclopedia of Genes Genomes)

PubMed Abstract of S. avermitilis

Nature Review Microbiology

The Streptomyces genome - be prepared! - by Prof. Sir David A. Hopwood

GNN (Genome News Network)

Cytochrome P450 family

List of cytochrome P450

Bacterial cytochrome P450 sequences

DSMZ information of S. avermitilis

Proteome Analysis@EBI of S. avermitilis

Peptidase of S. avermitilis @Sanger

IslandPath Analysis by the Brinkman Laboratory and Academic Computing Service at Simon Fraser University.

Restriction & modification in S. avermitilis at NEB REBASE Genome

tm RNA at Indiana Univ.

CAZy - Carbohydrate-Active enZYmes

DOLOP A Database of Bacterial Lipoproteins.

Converted SBML files of S. avermitilis.

Get seq. from genome.

mafft 7.182 - multiple alignment (FFT)

clustalW 2.1 - multiple alignment

clustal omega 1.2.1 - multiple alignment MPI

HmmerPfam v.3 search | PKS/NRPS domain finder | Bacterial Terpene Synthase finder

wwwblast - BLAST search

psiblast - PSI-BLAST

rpsblast - RSP-BLAST

delta blast - delta-BLAST

sequence converter

primer3 - primer design

Secreted proteins predicted

Signal peptides prediction V4

Annotation interface

WISE2 interface

Calc. oligo Tm | check PCR primers

Calc. protein MW

Calc. codon usage

Single digest - restriction digestion

ResView - simulation of restriction digest (genome)