Related Links
Third Party Streptomyces avermitilis DataBase

Microbial Genome Database for Comparative Analysis -MBGD-



Other Genome Projects of Streptomyces and related microorganisms

Streptomyces coelicolor A3(2) at Sanger Centre

Streptomyces griseus IFO13350 (streptomycin producer)

Streptomyces ambofaciens (industrial microorganism) at Genoscope

Streptomyces scabies at Sanger Centre

Nocardia farcinia at NIID

Rhodococcus sp. RHA1 at Genome Canada | other DB

Frankia alni (symbiotic nitrogen-fixing actinobacterium) at Genoscope

Saccharopolyspora erythraea at Univ. Cambridge

Mycobacterium tuberculosis [Sanger Centre|TubercuList|TIGR]

Gold Genomes OnLine Database
Other information

KEGG (Kyoto Encyclopedia of Genes Genomes)

PubMed Abstract of S. avermitilis

List of cytochrome P450

Bacterial cytochrome P450 sequences

DSMZ information of S. avermitilis

Peptidase of S. avermitilis @Sanger

IslandPath Analysis by the Brinkman Laboratory and Academic Computing Service at Simon Fraser University.

Restriction & modification in S. avermitilis at NEB REBASE Genome

CAZy - Carbohydrate-Active enZYmes

DOLOP A Database of Bacterial Lipoproteins.

Converted SBML files of S. avermitilis.

Get seq. from genome.

clustalW 2.1 - multiple alignment

clustal omega 1.2.4 - multiple alignment MPI

muscle 3.8.31 - multiple alignment

mafft 7.429 - multiple alignment

HmmerPfam v.3 search | PKS/NRPS domain finder | Bacterial Terpene Synthase finder

Pfam for Genome | Dbase

rpsblast - RSP-BLAST (Reversed Position Specific BLAST)

deltablast - Delta-BLAST (Domain Enhanced Lookup Time Accelerated BLAST)

ScanProsite - Prosite scanning -

sequence converter | Seqkit interface

sgRNA designer

primer3 - primer design

Secreted proteins predicted

SignalP signal peptide prediction (Sec-pathway)

TatP signal peptide prediction (Tat-pathway)

ChloloP prediction of chloroplast transit peptides

TargetP prediction of subcellular location in eukaryotic proteins

THMHH prediction of transmembrane helices in proteins

Annotation interface

Calc. oligo Tm | check PCR primers

Calc. protein MW

Calc. codon usage

ResView - simulation of restriction digest (genome)